References
A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p.Taunton J., Hassig C.A., Schreiber S.L.Science 272:408-411(1996)
Isolation and mapping of a human gene (RPD3L1)
that is homologous to RPD3, a transcription factor in Saccharomyces cerevisiae.Furukawa Y., Kawakami T., Sudo K., Inazawa J., Matsumine A., Akiyama T., Nakamura Y.Cytogenet. Cell Genet. 73:130-133(1996)
MEF-2 function is modified by a novel co-repressor, MITR.Sparrow D.B., Miska E.A., Langley E., Reynaud-Deonauth S., Kotecha S., Towers N., Spohr G., Kouzarides T., Mohun T.J.EMBO J. 18:5085-5098(1999)
BCoR, a novel corepressor involved in BCL-6 repression.Huynh K.D., Fischle W., Verdin E., Bardwell V.J.Genes Dev. 14:1810-1823(2000)
HDAC1, a histone deacetylase, forms a complex with Hus1 and Rad9, two G2/M checkpoint Rad proteins.Cai R.L., Yan-Neale Y., Cueto M.A., Xu H., Cohen D.J. Biol. Chem. 275:27909-27916(2000)
Receptor-interacting protein 140 directly recruits histone deacetylases for gene silencing.Wei L.-N., Hu X., Chandra D., Seto E., Farooqui M.J. Biol. Chem. 275:40782-40787(2000)
Sequestration and inhibition of Daxx-mediated transcriptional repression by PML.Li H., Leo C., Zhu J., Wu X., O'Neil J., Park E.-J., Chen J.D.Mol. Cell. Biol. 20:1784-1796(2000)
Identification of a transcriptional repressor related to the noncatalytic domain of histone deacetylases 4 and 5.Zhou X., Richon V.M., Rifkind R.A., Marks P.A.Proc. Natl. Acad. Sci. U.S.A. 97:1056-1061(2000)
Histone deacetylase 1 phosphorylation promotes enzymatic activity and complex formation.Pflum M.K.H., Tong J.K., Lane W.S., Schreiber S.L.J. Biol. Chem. 276:47733-47741(2001)
Sharp, an inducible cofactor that integrates nuclear receptor repression and activation.Shi Y., Downes M., Xie W., Kao H.-Y., Ordentlich P., Tsai C.-C., Hon M., Evans R.M.Genes Dev. 15:1140-1151(2001)
Stable histone deacetylase complexes distinguished by the presence of SANT domain proteins CoREST/kiaa0071 and Mta-L1.Humphrey G.W., Wang Y., Russanova V.R., Hirai T., Qin J., Nakatani Y., Howard B.H.J. Biol. Chem. 276:6817-6824(2001)
TGIF2 interacts with histone deacetylase 1 and represses transcription.Melhuish T.A., Gallo C.M., Wotton D.J. Biol. Chem. 276:32109-32114(2001)
ETO, a target of t(8;21)
in acute leukemia, makes distinct contacts with multiple histone deacetylases and binds mSin3A through its oligomerization domain.Amann J.M., Nip J., Strom D.K., Lutterbach B., Harada H., Lenny N., Downing J.R., Meyers S., Hiebert S.W.Mol. Cell. Biol. 21:6470-6483(2001)
The SUMO E3 ligase RanBP2 promotes modification of the HDAC4 deacetylase.Kirsh O., Seeler J.-S., Pichler A., Gast A., Mueller S., Miska E., Mathieu M., Harel-Bellan A., Kouzarides T., Melchior F., Dejean A.EMBO J. 21:2682-2691(2002)
SUMO-1 modification of histone deacetylase 1 (HDAC1)
modulates its biological activities.David G., Neptune M.A., DePinho R.A.J. Biol. Chem. 277:23658-23663(2002)
Role of acetylated human AP-endonuclease (APE1/Ref-1)
in regulation of the parathyroid hormone gene.Bhakat K.K., Izumi T., Yang S.H., Hazra T.K., Mitra S.EMBO J. 22:6299-6309(2003)
Human Sin3 deacetylase and trithorax-related Set1/Ash2 histone H3-K4 methyltransferase are tethered together selectively by the cell-proliferation factor HCF-1.Wysocka J., Myers M.P., Laherty C.D., Eisenman R.N., Herr W.Genes Dev. 17:896-911(2003)
A candidate X-linked mental retardation gene is a component of a new family of histone deacetylase-containing complexes.Hakimi M.-A., Dong Y., Lane W.S., Speicher D.W., Shiekhattar R.J. Biol. Chem. 278:7234-7239(2003)
Acetylated SP3 is a transcriptional activator.Ammanamanchi S., Freeman J.W., Brattain M.G.J. Biol. Chem. 278:35775-35780(2003)
Human MI-ER1 alpha and beta function as transcriptional repressors by recruitment of histone deacetylase 1 to their conserved ELM2 domain.Ding Z., Gillespie L.L., Paterno G.D.Mol. Cell. Biol. 23:250-258(2003)
Identification and characterization of three new components of the mSin3A corepressor complex.Fleischer T.C., Yun U.J., Ayer D.E.Mol. Cell. Biol. 23:3456-3467(2003)
Modulation of p120E4F transcriptional activity by the Gam1 adenoviral early protein.Colombo R., Draetta G.F., Chiocca S.Oncogene 22:2541-2547(2003)
Identification of a novel BRMS1-homologue protein p40 as a component of the mSin3A/p33(ING1b)
/HDAC1 deacetylase complex.Nikolaev A.Y., Papanikolaou N.A., Li M., Qin J., Gu W.Biochem. Biophys. Res. Commun. 323:1216-1222(2004)
MTA3 and the Mi-2/NuRD complex regulate cell fate during B lymphocyte differentiation.Fujita N., Jaye D.L., Geigerman C., Akyildiz A., Mooney M.R., Boss J.M., Wade P.A.Cell 119:75-86(2004)
Site-specific acetylation of the fetal globin activator NF-E4 prevents its ubiquitination and regulates its interaction with the histone deacetylase, HDAC1.Zhao Q., Cumming H., Cerruti L., Cunningham J.M., Jane S.M.J. Biol. Chem. 279:41477-41486(2004)
SENP1 enhances androgen receptor-dependent transcription through desumoylation of histone deacetylase 1.Cheng J., Wang D., Wang Z., Yeh E.T.H.Mol. Cell. Biol. 24:6021-6028(2004)
ICBP90, an E2F-1 target, recruits HDAC1 and binds to methyl-CpG through its SRA domain.Unoki M., Nishidate T., Nakamura Y.Oncogene 23:7601-7610(2004)
NuRD and SIN3 histone deacetylase complexes in development.Ahringer J.Trends Genet. 16:351-356(2000)
Functional characterization of JMJD2A, a histone deacetylase- and retinoblastoma-binding protein.Gray S.G., Iglesias A.H., Lizcano F., Villanueva R., Camelo S., Jingu H., Teh B.T., Koibuchi N., Chin W.W., Kokkotou E., Dangond F.J. Biol. Chem. 280:28507-28518(2005)
Tumor suppressor SMAR1 mediates cyclin D1 repression by recruitment of the SIN3/histone deacetylase 1 complex.Rampalli S., Pavithra L., Bhatt A., Kundu T.K., Chattopadhyay S.Mol. Cell. Biol. 25:8415-8429(2005)
INSM1 functions as a transcriptional repressor of the neuroD/beta2 gene through the recruitment of cyclin D1 and histone deacetylases.Liu W.D., Wang H.W., Muguira M., Breslin M.B., Lan M.S.Biochem. J. 397:169-177(2006)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M.Cell 127:635-648(2006)
Sp1 deacetylation induced by phorbol ester recruits p300 to activate 12(S)
-lipoxygenase gene transcription.Hung J.J., Wang Y.T., Chang W.C.Mol. Cell. Biol. 26:1770-1785(2006)
Breast cancer metastasis suppressor 1 functions as a corepressor by enhancing histone deacetylase 1-mediated deacetylation of RelA/p65 and promoting apoptosis.Liu Y., Smith P.W., Jones D.R.Mol. Cell. Biol. 26:8683-8696(2006)
SAP30L interacts with members of the Sin3A corepressor complex and targets Sin3A to the nucleolus.Viiri K.M., Korkeamaeki H., Kukkonen M.K., Nieminen L.K., Lindfors K., Peterson P., Maeki M., Kainulainen H., Lohi O.Nucleic Acids Res. 34:3288-3298(2006)
Toward a global characterization of the phosphoproteome in prostate cancer cells
identification of phosphoproteins in the LNCaP cell line.Giorgianni F., Zhao Y., Desiderio D.M., Beranova-Giorgianni S.Electrophoresis 28:2027-2034(2007)
Mechanisms of ceramide-mediated repression of the human telomerase reverse transcriptase promoter via deacetylation of Sp3 by histone deacetylase 1.Wooten-Blanks L.G., Song P., Senkal C.E., Ogretmen B.FASEB J. 21:3386-3397(2007)
Breast cancer associated transcriptional repressor PLU-1/JARID1B interacts directly with histone deacetylases.Barrett A., Santangelo S., Tan K., Catchpole S., Roberts K., Spencer-Dene B., Hall D., Scibetta A., Burchell J., Verdin E., Freemont P., Taylor-Papadimitriou J.Int. J. Cancer 121:265-275(2007)
Regulation of E2F1 function by the nuclear corepressor KAP1.Wang C., Rauscher F.J. III, Cress W.D., Chen J.J. Biol. Chem. 282:29902-29909(2007)
Critical and functional regulation of CHOP (C/EBP homologous protein)
through the N-terminal portion.Ohoka N., Hattori T., Kitagawa M., Onozaki K., Hayashi H.J. Biol. Chem. 282:35687-35694(2007)
Involvement of chromatin and histone deacetylation in SV40 T antigen transcription regulation.Valls E., Blanco-Garcia N., Aquizu N., Piedra D., Estaras C., de la Cruz X., Martinez-Balbas M.A.Nucleic Acids Res. 35:1958-1968(2007)
SUMO modification of the DEAD box protein p68 modulates its transcriptional activity and promotes its interaction with HDAC1.Jacobs A.M., Nicol S.M., Hislop R.G., Jaffray E.G., Hay R.T., Fuller-Pace F.V.Oncogene 26:5866-5876(2007)
The orphan nuclear receptor Rev-erbbeta recruits Tip60 and HDAC1 to regulate apolipoprotein CIII promoter.Wang J., Liu N., Liu Z., Li Y., Song C., Yuan H., Li Y.Y., Zhao X., Lu H.Biochim. Biophys. Acta 1783:224-236(2008)
Nuclear tumor necrosis factor receptor-associated factor 6 in lymphoid cells negatively regulates c-Myb-mediated transactivation through small ubiquitin-related modifier-1 modification.Pham L.V., Zhou H.J., Lin-Lee Y.C., Tamayo A.T., Yoshimura L.C., Fu L., Darnay B.G., Ford R.J.J. Biol. Chem. 283:5081-5089(2008)
Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle.Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M.Mol. Cell 31:438-448(2008)
CDYL bridges REST and histone methyltransferases for gene repression and suppression of cellular transformation.Mulligan P., Westbrook T.F., Ottinger M., Pavlova N., Chang B., Macia E., Shi Y.J., Barretina J., Liu J., Howley P.M., Elledge S.J., Shi Y.Mol. Cell 32:718-726(2008)
Protein lysine methyltransferase G9a acts on non-histone targets.Rathert P., Dhayalan A., Murakami M., Zhang X., Tamas R., Jurkowska R., Komatsu Y., Shinkai Y., Cheng X., Jeltsch A.Nat. Chem. Biol. 4:344-346(2008)
A calcium-dependent switch in a CREST-BRG1 complex regulates activity-dependent gene expression.Qiu Z., Ghosh A.Neuron 60:775-787(2008)
A quantitative atlas of mitotic phosphorylation.Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P.Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008)
Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography.Han G., Ye M., Zhou H., Jiang X., Feng S., Jiang X., Tian R., Wan D., Zou H., Gu J.Proteomics 8:1346-1361(2008)
Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.Anal. Chem. 81:4493-4501(2009)
SKI and MEL1 cooperate to inhibit transforming growth factor-beta signal in gastric cancer cells.Takahata M., Inoue Y., Tsuda H., Imoto I., Koinuma D., Hayashi M., Ichikura T., Yamori T., Nagasaki K., Yoshida M., Matsuoka M., Morishita K., Yuki K., Hanyu A., Miyazawa K., Inazawa J., Miyazono K., Imamura T.J. Biol. Chem. 284:3334-3344(2009)
FE65 binds Teashirt, inhibiting expression of the primate-specific caspase-4.Kajiwara Y., Akram A., Katsel P., Haroutunian V., Schmeidler J., Beecham G., Haines J.L., Pericak-Vance M.A., Buxbaum J.D.PLoS ONE 4:E5071-E5071(2009)
Chfr is linked to tumour metastasis through the downregulation of HDAC1.Oh Y.M., Kwon Y.E., Kim J.M., Bae S.J., Lee B.K., Yoo S.J., Chung C.H., Deshaies R.J., Seol J.H.Nat. Cell Biol. 11:295-302(2009)
Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K.Sci. Signal. 2:RA46-RA46(2009)
Lysine acetylation targets protein complexes and co-regulates major cellular functions.Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M.Science 325:834-840(2009)
Histone deacetylase and Cullin3-REN(KCTD11)
ubiquitin ligase interplay regulates Hedgehog signalling through Gli acetylation.Canettieri G., Di Marcotullio L., Greco A., Coni S., Antonucci L., Infante P., Pietrosanti L., De Smaele E., Ferretti E., Miele E., Pelloni M., De Simone G., Pedone E.M., Gallinari P., Giorgi A., Steinkuhler C., Vitagliano L., Pedone C. , Schinin M.E., Screpanti I., Gulino A.Nat. Cell Biol. 12:132-142(2010)
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M.Sci. Signal. 3:RA3-RA3(2010)
Initial characterization of the human central proteome.Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J.BMC Syst. Biol. 5:17-17(2011)
Maintenance of silent chromatin through replication requires SWI/SNF-like chromatin remodeler SMARCAD1.Rowbotham S.P., Barki L., Neves-Costa A., Santos F., Dean W., Hawkes N., Choudhary P., Will W.R., Webster J., Oxley D., Green C.M., Varga-Weisz P., Mermoud J.E.Mol. Cell 42:285-296(2011)
SUMOylation of DEC1 protein regulates its transcriptional activity and enhances its stability.Hong Y., Xing X., Li S., Bi H., Yang C., Zhao F., Liu Y., Ao X., Chang A.K., Wu H.PLoS ONE 6:E23046-E23046(2011)
System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B.Sci. Signal. 4:RS3-RS3(2011)
An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D., Wang L., Ye M., Zou H.J. Proteomics 96:253-262(2014)
Structural and functional characterization of a cell cycle associated HDAC1/2 complex reveals the structural basis for complex assembly and nucleosome targeting.Itoh T., Fairall L., Muskett F.W., Milano C.P., Watson P.J., Arnaudo N., Saleh A., Millard C.J., El-Mezgueldi M., Martino F., Schwabe J.W.Nucleic Acids Res. 43:2033-2044(2015)
+Additional computationally mapped references.<p>Provides general information on the entry.